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I have completed B.Sc Microbiology in regular mode and Masters in Microbiology through distance mode from EIILM, Sikkim. Now I want to do research course. Were to apply for it?

As per your request I have listed some of the colleges offering PhD in Microbiology:

> Amala Cancer Research Centre (Kerala, ph - 0487 2307950)

> Armed Forces Medical College (Pune, ph - 020 26363301)

> Assam University (Silchar, ph - 03842 270806)

> Barkatullah University (Bhopal, ph - 0755 2517100)

> Bharati Vidyapeeth University (Maharashtra, ph - 020 24407106)

> Brindavan College of UG/PG (Karnataka, ph - 080 43317777)

> Central Drug Research Institute (Uttar Pradesh, ph - 0522 2772450)

Since, you have completed master's degree in Microbiology, so you are eligible to apply for PhD course in the relevant discipline.
Those candidates who have completed master's degree in Microbiology with a minimum of 55% marks from any recognized university are eligible to do PhD in the relevant discipline. In order to get admission for PhD course you must have to appear and qualify in NET/CSIR/GATE entrance exam.
Below I have listed name of colleges/universities which offer PhD Microbiology course:
>A.V.V.M Sri Pushpam College
Address: Poondi, Thanjavur, Tamil Nadu 613503
Phone: 04374 239 523
>Amala Cancer Research Centre
Address: Amalanagar, Thrissur, Kerala 680555
Phone: 0487 230 7950
>Armed Forces Medical College
Address: Southern Command, Near Race Course, Solapur Road, Wanowrie, Pune, Maharashtra 411040
Phone: 020 2633 4230
>Assam University
Address: Cachar District, Silchar, Assam 788011
Phone: 03842 270 806
>Barkatullah University
Address: Barkatullah University, Habib Ganj, Bhopal, Madhya Pradesh 462026
Phone: 090395 00010
>Bharati Vidyapeeth University
Address: LBS Road, 13 Sadashiv Peth, Next to Alka Talkies, Pune, Maharashtra 411030
Phone: 020 2440 7100
>Central Drug Research Institute
Address: Sector 10, Jankipuram Extension, Sitapur Road, Lucknow, Uttar Pradesh 226031
Phone: 0522 277 2450

List of Colleges offering PhD in Microbiology course:

There are several colleges that are offering this PhD in Microbiology course. They are,

>> Indian Institute of Spices Research, Kerala
http://www.spices.res.in/

>> GITAM University
http://www.gitam.edu/

>> University of Delhi
http://www.du.ac.in/du/

>> DMIMS
http://www.dmimsu.edu.in/

>> JIPMER, Puducherry
http://jipmer.puducherry.gov.in/

>> Kurukshetra University
http://www.kuk.ac.in/

>> DY Patil University
http://www.dypatil.edu/

>> Central University of Rajasthan
http://www.curaj.ac.in/default.aspx?PageId=233

>> NIMS University, Rajasthan
https://nimsuniversity.org/

>> Osmania University
http://www.osmania.ac.in/

>> Hindusthan College of Arts and Science
http://hindusthan.net/hicas/

>> Indian Agricultural Research Institute, Delhi
http://www.iari.res.in/

>> Mahatma Gandhi University, Kerala
https://www.mgu.ac.in/

>> National Research Centre on Plant Biotechnology, Delhi
http://www.nrcpb.res.in/

If you want to do research course in microbiology then here is a list of top Research Colleges which are best in the Microbiology.

1. Veeriya Vandayar Memorial Sri Pushpam College. (Poondi, Tamil Nadu)
Contact No. 04374 2398234
2. AIIMS Jodhpur

3. Kuvempu University, (School of Biosciences)

4. Adhiprashakti College of arts and Science (GB Nagar, Vellore Tamil Nadu )
Contact no- 04713 242226

5. AmalaCancer Research Centre. (Amala Nagar Thrissur Kerela)
Contact no- 0487 2307868

The four top National level college for Phd in Microbiology are below-
1. Presidency College Chennai
2. St Xaviers College, Kolkata
3. Ramnarain Ruia College, Mumbai
4. VELS University, Chennai

You can know everything like best college, admission process, fees and other necessary details here

Here are the list of top colleges from Bangalore are,

Brindavan College, Bangalore
Indian Institute of Science, Bangalore
Jain (Deemed-to-be-university)

Here are the top Ph.D Microbiology Colleges in Bangalore

Brindavan College, Bangalore
Indian Institute of Science, Bangalore
Jain (Deemed-to-be-university)